matlab environment matlab2017b Search Results


matlab 2017b  (MathWorks Inc)
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MathWorks Inc matlab 2017b
Matlab 2017b, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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matlab2014a  (MathWorks Inc)
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MathWorks Inc matlab2014a
Matlab2014a, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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matlab environment matlab2017b  (MathWorks Inc)
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MathWorks Inc matlab environment matlab2017b
Matlab Environment Matlab2017b, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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raman spectral analysis  (MathWorks Inc)
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MathWorks Inc raman spectral analysis
(A) Representative coarse <t>Raman</t> maps reconstructed using the 1452 cm -1 peak intensity shown for P231, CTC, and LM cells. (B) Mean Raman spectra (with the shadow representing 1 s.d. and vertical offset for clarity) are shown and some prominent biological peaks highlighted for the three isogenic cell lines used in the study. (C) The three MCR component loadings derived from the <t>combined</t> <t>spectral</t> dataset are shown. MC1, MC2, and MC3 respectively show cytoplasm-like, nucleus-like, and quartz background spectral features. (D) The segmentation maps constructed by thresholding on MCR component scores for the cells in panel A are shown. The violin plots with embedded box and whisker plots show the distribution of MCR scores for cytoplasm-like (E) and nucleus-like (F) loadings. The scale bars represent 2 μm. * represents statistically significant differences at p < 0.05 threshold (Wilcoxon rank-sum test).
Raman Spectral Analysis, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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mosek version 8  (Mosek ApS)
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Mosek ApS mosek version 8
(A) Representative coarse <t>Raman</t> maps reconstructed using the 1452 cm -1 peak intensity shown for P231, CTC, and LM cells. (B) Mean Raman spectra (with the shadow representing 1 s.d. and vertical offset for clarity) are shown and some prominent biological peaks highlighted for the three isogenic cell lines used in the study. (C) The three MCR component loadings derived from the <t>combined</t> <t>spectral</t> dataset are shown. MC1, MC2, and MC3 respectively show cytoplasm-like, nucleus-like, and quartz background spectral features. (D) The segmentation maps constructed by thresholding on MCR component scores for the cells in panel A are shown. The violin plots with embedded box and whisker plots show the distribution of MCR scores for cytoplasm-like (E) and nucleus-like (F) loadings. The scale bars represent 2 μm. * represents statistically significant differences at p < 0.05 threshold (Wilcoxon rank-sum test).
Mosek Version 8, supplied by Mosek ApS, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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6dof simulation model  (MathWorks Inc)
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MathWorks Inc 6dof simulation model
(A) Representative coarse <t>Raman</t> maps reconstructed using the 1452 cm -1 peak intensity shown for P231, CTC, and LM cells. (B) Mean Raman spectra (with the shadow representing 1 s.d. and vertical offset for clarity) are shown and some prominent biological peaks highlighted for the three isogenic cell lines used in the study. (C) The three MCR component loadings derived from the <t>combined</t> <t>spectral</t> dataset are shown. MC1, MC2, and MC3 respectively show cytoplasm-like, nucleus-like, and quartz background spectral features. (D) The segmentation maps constructed by thresholding on MCR component scores for the cells in panel A are shown. The violin plots with embedded box and whisker plots show the distribution of MCR scores for cytoplasm-like (E) and nucleus-like (F) loadings. The scale bars represent 2 μm. * represents statistically significant differences at p < 0.05 threshold (Wilcoxon rank-sum test).
6dof Simulation Model, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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conn toolbox version 20.b  (MathWorks Inc)
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MathWorks Inc conn toolbox version 20.b
(A) Representative coarse <t>Raman</t> maps reconstructed using the 1452 cm -1 peak intensity shown for P231, CTC, and LM cells. (B) Mean Raman spectra (with the shadow representing 1 s.d. and vertical offset for clarity) are shown and some prominent biological peaks highlighted for the three isogenic cell lines used in the study. (C) The three MCR component loadings derived from the <t>combined</t> <t>spectral</t> dataset are shown. MC1, MC2, and MC3 respectively show cytoplasm-like, nucleus-like, and quartz background spectral features. (D) The segmentation maps constructed by thresholding on MCR component scores for the cells in panel A are shown. The violin plots with embedded box and whisker plots show the distribution of MCR scores for cytoplasm-like (E) and nucleus-like (F) loadings. The scale bars represent 2 μm. * represents statistically significant differences at p < 0.05 threshold (Wilcoxon rank-sum test).
Conn Toolbox Version 20.B, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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matlab2018b  (MathWorks Inc)
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MathWorks Inc matlab2018b
(A) Representative coarse <t>Raman</t> maps reconstructed using the 1452 cm -1 peak intensity shown for P231, CTC, and LM cells. (B) Mean Raman spectra (with the shadow representing 1 s.d. and vertical offset for clarity) are shown and some prominent biological peaks highlighted for the three isogenic cell lines used in the study. (C) The three MCR component loadings derived from the <t>combined</t> <t>spectral</t> dataset are shown. MC1, MC2, and MC3 respectively show cytoplasm-like, nucleus-like, and quartz background spectral features. (D) The segmentation maps constructed by thresholding on MCR component scores for the cells in panel A are shown. The violin plots with embedded box and whisker plots show the distribution of MCR scores for cytoplasm-like (E) and nucleus-like (F) loadings. The scale bars represent 2 μm. * represents statistically significant differences at p < 0.05 threshold (Wilcoxon rank-sum test).
Matlab2018b, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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imresize function  (MathWorks Inc)
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MathWorks Inc imresize function
(A) Representative coarse <t>Raman</t> maps reconstructed using the 1452 cm -1 peak intensity shown for P231, CTC, and LM cells. (B) Mean Raman spectra (with the shadow representing 1 s.d. and vertical offset for clarity) are shown and some prominent biological peaks highlighted for the three isogenic cell lines used in the study. (C) The three MCR component loadings derived from the <t>combined</t> <t>spectral</t> dataset are shown. MC1, MC2, and MC3 respectively show cytoplasm-like, nucleus-like, and quartz background spectral features. (D) The segmentation maps constructed by thresholding on MCR component scores for the cells in panel A are shown. The violin plots with embedded box and whisker plots show the distribution of MCR scores for cytoplasm-like (E) and nucleus-like (F) loadings. The scale bars represent 2 μm. * represents statistically significant differences at p < 0.05 threshold (Wilcoxon rank-sum test).
Imresize Function, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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registration estimator application  (MathWorks Inc)
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MathWorks Inc registration estimator application
(A) Representative coarse <t>Raman</t> maps reconstructed using the 1452 cm -1 peak intensity shown for P231, CTC, and LM cells. (B) Mean Raman spectra (with the shadow representing 1 s.d. and vertical offset for clarity) are shown and some prominent biological peaks highlighted for the three isogenic cell lines used in the study. (C) The three MCR component loadings derived from the <t>combined</t> <t>spectral</t> dataset are shown. MC1, MC2, and MC3 respectively show cytoplasm-like, nucleus-like, and quartz background spectral features. (D) The segmentation maps constructed by thresholding on MCR component scores for the cells in panel A are shown. The violin plots with embedded box and whisker plots show the distribution of MCR scores for cytoplasm-like (E) and nucleus-like (F) loadings. The scale bars represent 2 μm. * represents statistically significant differences at p < 0.05 threshold (Wilcoxon rank-sum test).
Registration Estimator Application, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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fsl6.0.2 ( https://fsl.fmrib.ox.ac.uk/fsl/fslwiki )  (MathWorks Inc)
90
MathWorks Inc fsl6.0.2 ( https://fsl.fmrib.ox.ac.uk/fsl/fslwiki )
(A) Representative coarse <t>Raman</t> maps reconstructed using the 1452 cm -1 peak intensity shown for P231, CTC, and LM cells. (B) Mean Raman spectra (with the shadow representing 1 s.d. and vertical offset for clarity) are shown and some prominent biological peaks highlighted for the three isogenic cell lines used in the study. (C) The three MCR component loadings derived from the <t>combined</t> <t>spectral</t> dataset are shown. MC1, MC2, and MC3 respectively show cytoplasm-like, nucleus-like, and quartz background spectral features. (D) The segmentation maps constructed by thresholding on MCR component scores for the cells in panel A are shown. The violin plots with embedded box and whisker plots show the distribution of MCR scores for cytoplasm-like (E) and nucleus-like (F) loadings. The scale bars represent 2 μm. * represents statistically significant differences at p < 0.05 threshold (Wilcoxon rank-sum test).
Fsl6.0.2 ( Https://Fsl.Fmrib.Ox.Ac.Uk/Fsl/Fslwiki ), supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


(A) Representative coarse Raman maps reconstructed using the 1452 cm -1 peak intensity shown for P231, CTC, and LM cells. (B) Mean Raman spectra (with the shadow representing 1 s.d. and vertical offset for clarity) are shown and some prominent biological peaks highlighted for the three isogenic cell lines used in the study. (C) The three MCR component loadings derived from the combined spectral dataset are shown. MC1, MC2, and MC3 respectively show cytoplasm-like, nucleus-like, and quartz background spectral features. (D) The segmentation maps constructed by thresholding on MCR component scores for the cells in panel A are shown. The violin plots with embedded box and whisker plots show the distribution of MCR scores for cytoplasm-like (E) and nucleus-like (F) loadings. The scale bars represent 2 μm. * represents statistically significant differences at p < 0.05 threshold (Wilcoxon rank-sum test).

Journal: bioRxiv

Article Title: Coarse Raman and optical diffraction tomographic imaging enable label-free phenotyping of isogenic breast cancer cells of varying metastatic potential

doi: 10.1101/2020.09.23.309138

Figure Lengend Snippet: (A) Representative coarse Raman maps reconstructed using the 1452 cm -1 peak intensity shown for P231, CTC, and LM cells. (B) Mean Raman spectra (with the shadow representing 1 s.d. and vertical offset for clarity) are shown and some prominent biological peaks highlighted for the three isogenic cell lines used in the study. (C) The three MCR component loadings derived from the combined spectral dataset are shown. MC1, MC2, and MC3 respectively show cytoplasm-like, nucleus-like, and quartz background spectral features. (D) The segmentation maps constructed by thresholding on MCR component scores for the cells in panel A are shown. The violin plots with embedded box and whisker plots show the distribution of MCR scores for cytoplasm-like (E) and nucleus-like (F) loadings. The scale bars represent 2 μm. * represents statistically significant differences at p < 0.05 threshold (Wilcoxon rank-sum test).

Article Snippet: All the Raman spectral analysis was performed in MATLAB 2017b (Mathworks) environment.

Techniques: Derivative Assay, Construct, Whisker Assay